- Applied Research
- Support to Technology Commercialization
- Technology Business Incubation
- Community-based Participatory Action Research
- YL:SCALE UP Program
- Human Resource Development
- Research Facilities Development
- Rice R4D Program
- Corn and Cassava R4D Program
- High Value Crops R4D Program
- Livestock and Poultry R4D Program
- Fisheries and Aquaculture R4D Program
- Biotechnology R4D Program
- Climate Change R4D Program
- Organic Agriculture R4D Program
- Biofuels Feedstock
- Basic and Strategic Research
- Knowledge Products and Services
- Information Communication and Technology Program
- Agriculture and Fisheries Research Policy and Advocacy
